Fixed:

• Game could freeze or crash while climbing.
  
• Can't change an area after being hit when all enemies are dead.
  
• Can't change an area after returning to previously visited areas and attacking dead enemies with a bomb or shuriken.
  

IMPORTANT NOTE:
An option to change controls for gamepad was added in one of the previous patches.
So if you wish to use left stick instead of D-pad for movement, for example, it can be done in the options.